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celltrace blue cell proliferation kit c34568  (Thermo Fisher)


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    Thermo Fisher celltrace blue cell proliferation kit c34568
    Celltrace Blue Cell Proliferation Kit C34568, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/celltrace+blue+cell+proliferation+kit/celltrace+violet/pm39688618-195-1-8
    Average 90 stars, based on 1 article reviews
    celltrace blue cell proliferation kit c34568 - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Isolation and Analysis of Tumor-derived Exosomes
    Article Snippet: The blood samples were delivered to the laboratory and processed as described below. . Equipment FalconTM 50 mL Conical Centrifuge Tubes (Fisher Scientific, cat. # 14-432-22).

    Enzyme-linked Immunosorbent Assay:

    Article Title: Immunomodulatory effects and improved outcomes with cisplatin- versus carboplatin-based chemotherapy plus atezolizumab in urothelial cancer
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse CXCL10 ELISA kit Thermo Fisher Scientific Cat# BMS6018 Mouse HMGB1 ELISA kit Tecan Cat# 30164033 CellTrace Blue Cell Proliferation kit Thermo Fisher Scientific Cat# C34568 RNeasy kits Qiagen FITC Annexin V Apoptosis Detection Kit with 7-AAD BD Biosciences Cat#: 556547 RIPA buffer Sigma LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen L34957 Deposited data Raw and analyzed bulk RNAseq (cell lines) This paper GEO: GSE235066 PBMC scRNA-seq raw counts and metadata This paper EGAS50000000104 IMvigor130 bulk RNAseq processed data (patient tumors) This paper EGAS50000000104 Experimental models: Cell lines Human cell line: 5637 Genentech N/A Human cell line: RT112 Genentech N/A Mouse cell line: MC38 Genentech N/A Mouse cell line: MC38-OVA Genentech N/A Experimental models: Organisms/strains C57BL/6 C57BL/6J.OT-I.Thy1.1 Software and algorithms R statistical software, version 4.0.2 The R Foundation https://www.r-project.org/ GSNAP Wu et al., 201649; Wu et al., 201050 survminer package, version 0.4.8 CRAN Repository https://cran.r-project.org/web/packages/ survminer/index.html survival package, version 3.2–7 CRAN Repository https://cran.r-project.org/web/packages/ survival/index.html limma package, 3.44.3 Bioconductor https://bioconductor.org/packages/ release/bioc/html/limma.html fgsea package, 1.14.0 Bioconductor http://bioconductor.org/packages/fgsea CellRanger, 3.1.0 10X Genomics http://10xgenomics.com/ Seurat, v3.2.2 Stuart et al., 201951 https://satijalab.org/seurat Harmony, v1.0 Korsunsky et al., 201952 https://github.com/immunogenomics/harmony FlowJo Becton Dickinson https://flowjo.com/ Graphpad Prism 7.0 software GraphPad Software, Inc. http://www.graphpad.com/scientific software/prism/ GSVA Bioconductor https://bioconductor.org/packages/ release/bioc/html/GSVA.html Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse CXCL10 ELISA kit Thermo Fisher Scientific Cat# BMS6018 Mouse HMGB1 ELISA kit Tecan Cat# 30164033 CellTrace Blue Cell Proliferation kit Thermo Fisher Scientific Cat# C34568 RNeasy kits Qiagen FITC Annexin V Apoptosis Detection Kit with 7-AAD BD Biosciences Cat#: 556547 RIPA buffer Sigma LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen L34957 Deposited data Raw and analyzed bulk RNAseq (cell lines) This paper GEO: GSE235066 PBMC scRNA-seq raw counts and metadata This paper EGAS50000000104 IMvigor130 bulk RNAseq processed data (patient tumors) This paper EGAS50000000104 Experimental models: Cell lines Human cell line: 5637 Genentech N/A Human cell line: RT112 Genentech N/A Mouse cell line: MC38 Genentech N/A Mouse cell line: MC38-OVA Genentech N/A Experimental models: Organisms/strains C57BL/6 C57BL/6J.OT-I.Thy1.1 Software and algorithms R statistical software, version 4.0.2 The R Foundation https://www.r-project.org/ GSNAP Wu et al., 201649; Wu et al., 201050 survminer package, version 0.4.8 CRAN Repository https://cran.r-project.org/web/packages/ survminer/index.html survival package, version 3.2–7 CRAN Repository https://cran.r-project.org/web/packages/ survival/index.html limma package, 3.44.3 Bioconductor https://bioconductor.org/packages/ release/bioc/html/limma.html fgsea package, 1.14.0 Bioconductor http://bioconductor.org/packages/fgsea CellRanger, 3.1.0 10X Genomics http://10xgenomics.com/ Seurat, v3.2.2 Stuart et al., 201951 https://satijalab.org/seurat Harmony, v1.0 Korsunsky et al., 201952 https://github.com/immunogenomics/harmony FlowJo Becton Dickinson https://flowjo.com/ Graphpad Prism 7.0 software GraphPad Software, Inc. http://www.graphpad.com/scientific software/prism/ GSVA Bioconductor https://bioconductor.org/packages/ release/bioc/html/GSVA.html Article ll OPEN ACCESS ..

    Staining:

    Article Title: Immunomodulatory effects and improved outcomes with cisplatin- versus carboplatin-based chemotherapy plus atezolizumab in urothelial cancer
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse CXCL10 ELISA kit Thermo Fisher Scientific Cat# BMS6018 Mouse HMGB1 ELISA kit Tecan Cat# 30164033 CellTrace Blue Cell Proliferation kit Thermo Fisher Scientific Cat# C34568 RNeasy kits Qiagen FITC Annexin V Apoptosis Detection Kit with 7-AAD BD Biosciences Cat#: 556547 RIPA buffer Sigma LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen L34957 Deposited data Raw and analyzed bulk RNAseq (cell lines) This paper GEO: GSE235066 PBMC scRNA-seq raw counts and metadata This paper EGAS50000000104 IMvigor130 bulk RNAseq processed data (patient tumors) This paper EGAS50000000104 Experimental models: Cell lines Human cell line: 5637 Genentech N/A Human cell line: RT112 Genentech N/A Mouse cell line: MC38 Genentech N/A Mouse cell line: MC38-OVA Genentech N/A Experimental models: Organisms/strains C57BL/6 C57BL/6J.OT-I.Thy1.1 Software and algorithms R statistical software, version 4.0.2 The R Foundation https://www.r-project.org/ GSNAP Wu et al., 201649; Wu et al., 201050 survminer package, version 0.4.8 CRAN Repository https://cran.r-project.org/web/packages/ survminer/index.html survival package, version 3.2–7 CRAN Repository https://cran.r-project.org/web/packages/ survival/index.html limma package, 3.44.3 Bioconductor https://bioconductor.org/packages/ release/bioc/html/limma.html fgsea package, 1.14.0 Bioconductor http://bioconductor.org/packages/fgsea CellRanger, 3.1.0 10X Genomics http://10xgenomics.com/ Seurat, v3.2.2 Stuart et al., 201951 https://satijalab.org/seurat Harmony, v1.0 Korsunsky et al., 201952 https://github.com/immunogenomics/harmony FlowJo Becton Dickinson https://flowjo.com/ Graphpad Prism 7.0 software GraphPad Software, Inc. http://www.graphpad.com/scientific software/prism/ GSVA Bioconductor https://bioconductor.org/packages/ release/bioc/html/GSVA.html Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse CXCL10 ELISA kit Thermo Fisher Scientific Cat# BMS6018 Mouse HMGB1 ELISA kit Tecan Cat# 30164033 CellTrace Blue Cell Proliferation kit Thermo Fisher Scientific Cat# C34568 RNeasy kits Qiagen FITC Annexin V Apoptosis Detection Kit with 7-AAD BD Biosciences Cat#: 556547 RIPA buffer Sigma LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen L34957 Deposited data Raw and analyzed bulk RNAseq (cell lines) This paper GEO: GSE235066 PBMC scRNA-seq raw counts and metadata This paper EGAS50000000104 IMvigor130 bulk RNAseq processed data (patient tumors) This paper EGAS50000000104 Experimental models: Cell lines Human cell line: 5637 Genentech N/A Human cell line: RT112 Genentech N/A Mouse cell line: MC38 Genentech N/A Mouse cell line: MC38-OVA Genentech N/A Experimental models: Organisms/strains C57BL/6 C57BL/6J.OT-I.Thy1.1 Software and algorithms R statistical software, version 4.0.2 The R Foundation https://www.r-project.org/ GSNAP Wu et al., 201649; Wu et al., 201050 survminer package, version 0.4.8 CRAN Repository https://cran.r-project.org/web/packages/ survminer/index.html survival package, version 3.2–7 CRAN Repository https://cran.r-project.org/web/packages/ survival/index.html limma package, 3.44.3 Bioconductor https://bioconductor.org/packages/ release/bioc/html/limma.html fgsea package, 1.14.0 Bioconductor http://bioconductor.org/packages/fgsea CellRanger, 3.1.0 10X Genomics http://10xgenomics.com/ Seurat, v3.2.2 Stuart et al., 201951 https://satijalab.org/seurat Harmony, v1.0 Korsunsky et al., 201952 https://github.com/immunogenomics/harmony FlowJo Becton Dickinson https://flowjo.com/ Graphpad Prism 7.0 software GraphPad Software, Inc. http://www.graphpad.com/scientific software/prism/ GSVA Bioconductor https://bioconductor.org/packages/ release/bioc/html/GSVA.html Article ll OPEN ACCESS ..

    Software:

    Article Title: Immunomodulatory effects and improved outcomes with cisplatin- versus carboplatin-based chemotherapy plus atezolizumab in urothelial cancer
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Mouse CXCL10 ELISA kit Thermo Fisher Scientific Cat# BMS6018 Mouse HMGB1 ELISA kit Tecan Cat# 30164033 CellTrace Blue Cell Proliferation kit Thermo Fisher Scientific Cat# C34568 RNeasy kits Qiagen FITC Annexin V Apoptosis Detection Kit with 7-AAD BD Biosciences Cat#: 556547 RIPA buffer Sigma LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen L34957 Deposited data Raw and analyzed bulk RNAseq (cell lines) This paper GEO: GSE235066 PBMC scRNA-seq raw counts and metadata This paper EGAS50000000104 IMvigor130 bulk RNAseq processed data (patient tumors) This paper EGAS50000000104 Experimental models: Cell lines Human cell line: 5637 Genentech N/A Human cell line: RT112 Genentech N/A Mouse cell line: MC38 Genentech N/A Mouse cell line: MC38-OVA Genentech N/A Experimental models: Organisms/strains C57BL/6 C57BL/6J.OT-I.Thy1.1 Software and algorithms R statistical software, version 4.0.2 The R Foundation https://www.r-project.org/ GSNAP Wu et al., 201649; Wu et al., 201050 survminer package, version 0.4.8 CRAN Repository https://cran.r-project.org/web/packages/ survminer/index.html survival package, version 3.2–7 CRAN Repository https://cran.r-project.org/web/packages/ survival/index.html limma package, 3.44.3 Bioconductor https://bioconductor.org/packages/ release/bioc/html/limma.html fgsea package, 1.14.0 Bioconductor http://bioconductor.org/packages/fgsea CellRanger, 3.1.0 10X Genomics http://10xgenomics.com/ Seurat, v3.2.2 Stuart et al., 201951 https://satijalab.org/seurat Harmony, v1.0 Korsunsky et al., 201952 https://github.com/immunogenomics/harmony FlowJo Becton Dickinson https://flowjo.com/ Graphpad Prism 7.0 software GraphPad Software, Inc. http://www.graphpad.com/scientific software/prism/ GSVA Bioconductor https://bioconductor.org/packages/ release/bioc/html/GSVA.html Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER Mouse CXCL10 ELISA kit Thermo Fisher Scientific Cat# BMS6018 Mouse HMGB1 ELISA kit Tecan Cat# 30164033 CellTrace Blue Cell Proliferation kit Thermo Fisher Scientific Cat# C34568 RNeasy kits Qiagen FITC Annexin V Apoptosis Detection Kit with 7-AAD BD Biosciences Cat#: 556547 RIPA buffer Sigma LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Invitrogen L34957 Deposited data Raw and analyzed bulk RNAseq (cell lines) This paper GEO: GSE235066 PBMC scRNA-seq raw counts and metadata This paper EGAS50000000104 IMvigor130 bulk RNAseq processed data (patient tumors) This paper EGAS50000000104 Experimental models: Cell lines Human cell line: 5637 Genentech N/A Human cell line: RT112 Genentech N/A Mouse cell line: MC38 Genentech N/A Mouse cell line: MC38-OVA Genentech N/A Experimental models: Organisms/strains C57BL/6 C57BL/6J.OT-I.Thy1.1 Software and algorithms R statistical software, version 4.0.2 The R Foundation https://www.r-project.org/ GSNAP Wu et al., 201649; Wu et al., 201050 survminer package, version 0.4.8 CRAN Repository https://cran.r-project.org/web/packages/ survminer/index.html survival package, version 3.2–7 CRAN Repository https://cran.r-project.org/web/packages/ survival/index.html limma package, 3.44.3 Bioconductor https://bioconductor.org/packages/ release/bioc/html/limma.html fgsea package, 1.14.0 Bioconductor http://bioconductor.org/packages/fgsea CellRanger, 3.1.0 10X Genomics http://10xgenomics.com/ Seurat, v3.2.2 Stuart et al., 201951 https://satijalab.org/seurat Harmony, v1.0 Korsunsky et al., 201952 https://github.com/immunogenomics/harmony FlowJo Becton Dickinson https://flowjo.com/ Graphpad Prism 7.0 software GraphPad Software, Inc. http://www.graphpad.com/scientific software/prism/ GSVA Bioconductor https://bioconductor.org/packages/ release/bioc/html/GSVA.html Article ll OPEN ACCESS ..

    Cell Isolation:

    Article Title: Isolation and Analysis of Tumor-derived Exosomes
    Article Snippet: .. Materials List Whole blood of normal donors Falcon™ 50 mL Conical Centrifuge Tubes (Fisher Scientific, cat. # 14-432-22) Ficoll® Paque Plus (Millipore Sigma, cat. # 17-1440-03) Lonza™ BioWhittaker™ Phosphate Buffered Solution (PBS) (Lonza Inc., cat. # BW17-516F) RPMI-1640 Medium (Sigma-Aldrich, St. Louis, MO, USA, cat. # R0883) Corning™ Regular Fetal Bovine Serum (FBS; Fisher Scientific, Pittsburgh, PA, cat. # MT35011CV) Penicillin Streptomycin Solution (Corning, Corning, NY, USA, cat. # 30-002-CI) L-Glutamine (Fisher Scientific, cat. # 25030081) 150 cm 2 BD Falcon™ Tissue Culture Treated Flasks (Fisher Scientific, cat. # 08-772-48) CD4 + T Cell Isolation Kit, human (Miltenyi Biotec, San Diego, CA, cat. # 130-096-533) CD8 + T Cell Isolation Kit, human (Miltenyi Biotec, cat. # 130-096-495) AutoMACS cell separator (Miltenyi Biotec) CellTrace™ Blue Cell Proliferation Kit (Thermo Scientific, cat. # {"type":"entrez-nucleotide","attrs":{"text":"C34568","term_id":"2370709","term_text":"C34568"}} C34568 ) Accuri flow cytometer (BD Bioscience) FITC Annexin V Apoptosis Detection Kit I (BD Biosciences, cat. # 556547) Peripheral Blood Mononuclear Cell (PBMC) Isolation and Culture Collect human venous blood sample in heparinized vials and mix with sterile PBS (pH 7.4) by gently inverting the tube several times (1:1 v/v) Fill 15 mL of Ficoll Paque in a 50mL centrifuge tube Gently layer 35mL of the diluted blood on the top of Ficoll Histopaque using a pipette NOTE: The layering should be done very slowly avoiding a mixture of blood and Ficoll Paque Centrifuge tubes for 20 min at 1200xg at 4 °C with the break function turned off Immediately aspirate the buffy coat (~10 ml) (PBMCs) which is formed in the interphase between Histopaque and plasma Transfer to a new tube and wash three times (100xg for 10 min) with 50mL of sterile PBS Resuspend PBMCs in RPMI supplemented with 10% (v/v) exosome-depleted FBS, 100 IU/mL penicillin, 100 μg/mL streptomycin, and 2 mM/L l-glutamine and plate for 2–3 h to remove plastic-adherent monocytes Determine cell number NOTE: Isolation from 10mL of blood leads to an approximate yield of 10 7 to 10 8 PBMCs. ..

    Flow Cytometry:

    Article Title: Isolation and Analysis of Tumor-derived Exosomes
    Article Snippet: .. Materials List Whole blood of normal donors Falcon™ 50 mL Conical Centrifuge Tubes (Fisher Scientific, cat. # 14-432-22) Ficoll® Paque Plus (Millipore Sigma, cat. # 17-1440-03) Lonza™ BioWhittaker™ Phosphate Buffered Solution (PBS) (Lonza Inc., cat. # BW17-516F) RPMI-1640 Medium (Sigma-Aldrich, St. Louis, MO, USA, cat. # R0883) Corning™ Regular Fetal Bovine Serum (FBS; Fisher Scientific, Pittsburgh, PA, cat. # MT35011CV) Penicillin Streptomycin Solution (Corning, Corning, NY, USA, cat. # 30-002-CI) L-Glutamine (Fisher Scientific, cat. # 25030081) 150 cm 2 BD Falcon™ Tissue Culture Treated Flasks (Fisher Scientific, cat. # 08-772-48) CD4 + T Cell Isolation Kit, human (Miltenyi Biotec, San Diego, CA, cat. # 130-096-533) CD8 + T Cell Isolation Kit, human (Miltenyi Biotec, cat. # 130-096-495) AutoMACS cell separator (Miltenyi Biotec) CellTrace™ Blue Cell Proliferation Kit (Thermo Scientific, cat. # {"type":"entrez-nucleotide","attrs":{"text":"C34568","term_id":"2370709","term_text":"C34568"}} C34568 ) Accuri flow cytometer (BD Bioscience) FITC Annexin V Apoptosis Detection Kit I (BD Biosciences, cat. # 556547) Peripheral Blood Mononuclear Cell (PBMC) Isolation and Culture Collect human venous blood sample in heparinized vials and mix with sterile PBS (pH 7.4) by gently inverting the tube several times (1:1 v/v) Fill 15 mL of Ficoll Paque in a 50mL centrifuge tube Gently layer 35mL of the diluted blood on the top of Ficoll Histopaque using a pipette NOTE: The layering should be done very slowly avoiding a mixture of blood and Ficoll Paque Centrifuge tubes for 20 min at 1200xg at 4 °C with the break function turned off Immediately aspirate the buffy coat (~10 ml) (PBMCs) which is formed in the interphase between Histopaque and plasma Transfer to a new tube and wash three times (100xg for 10 min) with 50mL of sterile PBS Resuspend PBMCs in RPMI supplemented with 10% (v/v) exosome-depleted FBS, 100 IU/mL penicillin, 100 μg/mL streptomycin, and 2 mM/L l-glutamine and plate for 2–3 h to remove plastic-adherent monocytes Determine cell number NOTE: Isolation from 10mL of blood leads to an approximate yield of 10 7 to 10 8 PBMCs. ..

    Isolation:

    Article Title: Isolation and Analysis of Tumor-derived Exosomes
    Article Snippet: .. Materials List Whole blood of normal donors Falcon™ 50 mL Conical Centrifuge Tubes (Fisher Scientific, cat. # 14-432-22) Ficoll® Paque Plus (Millipore Sigma, cat. # 17-1440-03) Lonza™ BioWhittaker™ Phosphate Buffered Solution (PBS) (Lonza Inc., cat. # BW17-516F) RPMI-1640 Medium (Sigma-Aldrich, St. Louis, MO, USA, cat. # R0883) Corning™ Regular Fetal Bovine Serum (FBS; Fisher Scientific, Pittsburgh, PA, cat. # MT35011CV) Penicillin Streptomycin Solution (Corning, Corning, NY, USA, cat. # 30-002-CI) L-Glutamine (Fisher Scientific, cat. # 25030081) 150 cm 2 BD Falcon™ Tissue Culture Treated Flasks (Fisher Scientific, cat. # 08-772-48) CD4 + T Cell Isolation Kit, human (Miltenyi Biotec, San Diego, CA, cat. # 130-096-533) CD8 + T Cell Isolation Kit, human (Miltenyi Biotec, cat. # 130-096-495) AutoMACS cell separator (Miltenyi Biotec) CellTrace™ Blue Cell Proliferation Kit (Thermo Scientific, cat. # {"type":"entrez-nucleotide","attrs":{"text":"C34568","term_id":"2370709","term_text":"C34568"}} C34568 ) Accuri flow cytometer (BD Bioscience) FITC Annexin V Apoptosis Detection Kit I (BD Biosciences, cat. # 556547) Peripheral Blood Mononuclear Cell (PBMC) Isolation and Culture Collect human venous blood sample in heparinized vials and mix with sterile PBS (pH 7.4) by gently inverting the tube several times (1:1 v/v) Fill 15 mL of Ficoll Paque in a 50mL centrifuge tube Gently layer 35mL of the diluted blood on the top of Ficoll Histopaque using a pipette NOTE: The layering should be done very slowly avoiding a mixture of blood and Ficoll Paque Centrifuge tubes for 20 min at 1200xg at 4 °C with the break function turned off Immediately aspirate the buffy coat (~10 ml) (PBMCs) which is formed in the interphase between Histopaque and plasma Transfer to a new tube and wash three times (100xg for 10 min) with 50mL of sterile PBS Resuspend PBMCs in RPMI supplemented with 10% (v/v) exosome-depleted FBS, 100 IU/mL penicillin, 100 μg/mL streptomycin, and 2 mM/L l-glutamine and plate for 2–3 h to remove plastic-adherent monocytes Determine cell number NOTE: Isolation from 10mL of blood leads to an approximate yield of 10 7 to 10 8 PBMCs. ..

    Sterility:

    Article Title: Isolation and Analysis of Tumor-derived Exosomes
    Article Snippet: .. Materials List Whole blood of normal donors Falcon™ 50 mL Conical Centrifuge Tubes (Fisher Scientific, cat. # 14-432-22) Ficoll® Paque Plus (Millipore Sigma, cat. # 17-1440-03) Lonza™ BioWhittaker™ Phosphate Buffered Solution (PBS) (Lonza Inc., cat. # BW17-516F) RPMI-1640 Medium (Sigma-Aldrich, St. Louis, MO, USA, cat. # R0883) Corning™ Regular Fetal Bovine Serum (FBS; Fisher Scientific, Pittsburgh, PA, cat. # MT35011CV) Penicillin Streptomycin Solution (Corning, Corning, NY, USA, cat. # 30-002-CI) L-Glutamine (Fisher Scientific, cat. # 25030081) 150 cm 2 BD Falcon™ Tissue Culture Treated Flasks (Fisher Scientific, cat. # 08-772-48) CD4 + T Cell Isolation Kit, human (Miltenyi Biotec, San Diego, CA, cat. # 130-096-533) CD8 + T Cell Isolation Kit, human (Miltenyi Biotec, cat. # 130-096-495) AutoMACS cell separator (Miltenyi Biotec) CellTrace™ Blue Cell Proliferation Kit (Thermo Scientific, cat. # {"type":"entrez-nucleotide","attrs":{"text":"C34568","term_id":"2370709","term_text":"C34568"}} C34568 ) Accuri flow cytometer (BD Bioscience) FITC Annexin V Apoptosis Detection Kit I (BD Biosciences, cat. # 556547) Peripheral Blood Mononuclear Cell (PBMC) Isolation and Culture Collect human venous blood sample in heparinized vials and mix with sterile PBS (pH 7.4) by gently inverting the tube several times (1:1 v/v) Fill 15 mL of Ficoll Paque in a 50mL centrifuge tube Gently layer 35mL of the diluted blood on the top of Ficoll Histopaque using a pipette NOTE: The layering should be done very slowly avoiding a mixture of blood and Ficoll Paque Centrifuge tubes for 20 min at 1200xg at 4 °C with the break function turned off Immediately aspirate the buffy coat (~10 ml) (PBMCs) which is formed in the interphase between Histopaque and plasma Transfer to a new tube and wash three times (100xg for 10 min) with 50mL of sterile PBS Resuspend PBMCs in RPMI supplemented with 10% (v/v) exosome-depleted FBS, 100 IU/mL penicillin, 100 μg/mL streptomycin, and 2 mM/L l-glutamine and plate for 2–3 h to remove plastic-adherent monocytes Determine cell number NOTE: Isolation from 10mL of blood leads to an approximate yield of 10 7 to 10 8 PBMCs. ..

    Transferring:

    Article Title: Isolation and Analysis of Tumor-derived Exosomes
    Article Snippet: .. Materials List Whole blood of normal donors Falcon™ 50 mL Conical Centrifuge Tubes (Fisher Scientific, cat. # 14-432-22) Ficoll® Paque Plus (Millipore Sigma, cat. # 17-1440-03) Lonza™ BioWhittaker™ Phosphate Buffered Solution (PBS) (Lonza Inc., cat. # BW17-516F) RPMI-1640 Medium (Sigma-Aldrich, St. Louis, MO, USA, cat. # R0883) Corning™ Regular Fetal Bovine Serum (FBS; Fisher Scientific, Pittsburgh, PA, cat. # MT35011CV) Penicillin Streptomycin Solution (Corning, Corning, NY, USA, cat. # 30-002-CI) L-Glutamine (Fisher Scientific, cat. # 25030081) 150 cm 2 BD Falcon™ Tissue Culture Treated Flasks (Fisher Scientific, cat. # 08-772-48) CD4 + T Cell Isolation Kit, human (Miltenyi Biotec, San Diego, CA, cat. # 130-096-533) CD8 + T Cell Isolation Kit, human (Miltenyi Biotec, cat. # 130-096-495) AutoMACS cell separator (Miltenyi Biotec) CellTrace™ Blue Cell Proliferation Kit (Thermo Scientific, cat. # {"type":"entrez-nucleotide","attrs":{"text":"C34568","term_id":"2370709","term_text":"C34568"}} C34568 ) Accuri flow cytometer (BD Bioscience) FITC Annexin V Apoptosis Detection Kit I (BD Biosciences, cat. # 556547) Peripheral Blood Mononuclear Cell (PBMC) Isolation and Culture Collect human venous blood sample in heparinized vials and mix with sterile PBS (pH 7.4) by gently inverting the tube several times (1:1 v/v) Fill 15 mL of Ficoll Paque in a 50mL centrifuge tube Gently layer 35mL of the diluted blood on the top of Ficoll Histopaque using a pipette NOTE: The layering should be done very slowly avoiding a mixture of blood and Ficoll Paque Centrifuge tubes for 20 min at 1200xg at 4 °C with the break function turned off Immediately aspirate the buffy coat (~10 ml) (PBMCs) which is formed in the interphase between Histopaque and plasma Transfer to a new tube and wash three times (100xg for 10 min) with 50mL of sterile PBS Resuspend PBMCs in RPMI supplemented with 10% (v/v) exosome-depleted FBS, 100 IU/mL penicillin, 100 μg/mL streptomycin, and 2 mM/L l-glutamine and plate for 2–3 h to remove plastic-adherent monocytes Determine cell number NOTE: Isolation from 10mL of blood leads to an approximate yield of 10 7 to 10 8 PBMCs. ..

    Incubation:

    Article Title: Antigen-Specific T Cell Recall Assay To Screen Drugs For Off-Target Effects
    Article Snippet: .. Donor PBMCs were incubated with 5μM CellTrace Blue Cell Proliferation kit (ThermoFisher, Cat # C34574) proliferation dye and then stimulated with anti-CD3/anti-CD28 beads (ThermoFisher, Cat # 11132D) in a 96-well plate. ..

    Labeling:

    Article Title: Immunomodulatory effects and improved outcomes with cisplatin- versus carboplatin-based chemotherapy plus atezolizumab in urothelial cancer
    Article Snippet: .. The following day, OT-I CD8 + T cells labeled with the CellTrace Blue Cell proliferation kit (Thermo Fisher Scientific, Cat# C34568) were added at a density of 50,000 cells/well in the presence or absence of DCs. ..



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    Celltrace Blue Cell Proliferation Kit, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/celltrace+blue+cell+proliferation+kit/pmc10897541-355-11-16
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    Co-culture of cisplatin- versus carboplatin-pretreated MC38 cancer cells with bone marrow-derived DCs and OT-I T cells induces DC activation, OT-I T cell proliferation, and antigen-specific T cell-mediated MC38 killing (A) HMGB1 secretion as measured in the supernatant collected from MC38 cancer cells treated with increasing concentrations of cisplatin (red) or carboplatin (black). Supernatant was collected 3 days after treatment. Data depict one representative experiment of two independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (B) Protein expression of MHC-I, PD-L1, CD40, and CD86 as measured by median fluorescence intensity in monocyte-derived DCs after 24 h of co-culture with MC38 cancer cells that were primed with dose titrations of cisplatin (red) or carboplatin (black) for 24 h. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (C) Flow cytometry histograms depicting OT-I T cell proliferation measured by <t>CellTrace</t> Blue dilution assay. MC38-OVA cells were pretreated with dose titrations of cisplatin or carboplatin for 24 h. OT-I T cells were co-cultured with pretreated MC38-OVA cells for 3 days in the presence or absence of monocyte-derived DCs before the proliferation assay. Data depict one representative experiment of two independent experiments. (D and E) Representative flow cytogram showing OT-I T cell-mediated MC38-OVA cancer cell killing (D) and the summarized percentage of OT-I T cell-mediated tumor cell death (E) as measured by 7-AAD and annexin V staining. MC38-OVA tumor cells were pretreated with increasing concentrations of cisplatin or carboplatin for 24 h, followed by co-culture with OT-I T cells for 5 h before the assay. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. See also <xref ref-type=Figure S9 . " width="250" height="auto" />
    Celltrace Blue Cell Proliferation Kit, supplied by STEMCELL Technologies Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Co-culture of cisplatin- versus carboplatin-pretreated MC38 cancer cells with bone marrow-derived DCs and OT-I T cells induces DC activation, OT-I T cell proliferation, and antigen-specific T cell-mediated MC38 killing (A) HMGB1 secretion as measured in the supernatant collected from MC38 cancer cells treated with increasing concentrations of cisplatin (red) or carboplatin (black). Supernatant was collected 3 days after treatment. Data depict one representative experiment of two independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (B) Protein expression of MHC-I, PD-L1, CD40, and CD86 as measured by median fluorescence intensity in monocyte-derived DCs after 24 h of co-culture with MC38 cancer cells that were primed with dose titrations of cisplatin (red) or carboplatin (black) for 24 h. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (C) Flow cytometry histograms depicting OT-I T cell proliferation measured by <t>CellTrace</t> Blue dilution assay. MC38-OVA cells were pretreated with dose titrations of cisplatin or carboplatin for 24 h. OT-I T cells were co-cultured with pretreated MC38-OVA cells for 3 days in the presence or absence of monocyte-derived DCs before the proliferation assay. Data depict one representative experiment of two independent experiments. (D and E) Representative flow cytogram showing OT-I T cell-mediated MC38-OVA cancer cell killing (D) and the summarized percentage of OT-I T cell-mediated tumor cell death (E) as measured by 7-AAD and annexin V staining. MC38-OVA tumor cells were pretreated with increasing concentrations of cisplatin or carboplatin for 24 h, followed by co-culture with OT-I T cells for 5 h before the assay. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. See also <xref ref-type=Figure S9 . " width="250" height="auto" />
    Celltrace Pacific Blue Cell Proliferation Kit, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Co-culture of cisplatin- versus carboplatin-pretreated MC38 cancer cells with bone marrow-derived DCs and OT-I T cells induces DC activation, OT-I T cell proliferation, and antigen-specific T cell-mediated MC38 killing (A) HMGB1 secretion as measured in the supernatant collected from MC38 cancer cells treated with increasing concentrations of cisplatin (red) or carboplatin (black). Supernatant was collected 3 days after treatment. Data depict one representative experiment of two independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (B) Protein expression of MHC-I, PD-L1, CD40, and CD86 as measured by median fluorescence intensity in monocyte-derived DCs after 24 h of co-culture with MC38 cancer cells that were primed with dose titrations of cisplatin (red) or carboplatin (black) for 24 h. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (C) Flow cytometry histograms depicting OT-I T cell proliferation measured by <t>CellTrace</t> Blue dilution assay. MC38-OVA cells were pretreated with dose titrations of cisplatin or carboplatin for 24 h. OT-I T cells were co-cultured with pretreated MC38-OVA cells for 3 days in the presence or absence of monocyte-derived DCs before the proliferation assay. Data depict one representative experiment of two independent experiments. (D and E) Representative flow cytogram showing OT-I T cell-mediated MC38-OVA cancer cell killing (D) and the summarized percentage of OT-I T cell-mediated tumor cell death (E) as measured by 7-AAD and annexin V staining. MC38-OVA tumor cells were pretreated with increasing concentrations of cisplatin or carboplatin for 24 h, followed by co-culture with OT-I T cells for 5 h before the assay. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. See also <xref ref-type=Figure S9 . " width="250" height="auto" />
    Celltrace Blue Cell Proliferation® Kit, supplied by Fisher Scientific, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Co-culture of cisplatin- versus carboplatin-pretreated MC38 cancer cells with bone marrow-derived DCs and OT-I T cells induces DC activation, OT-I T cell proliferation, and antigen-specific T cell-mediated MC38 killing (A) HMGB1 secretion as measured in the supernatant collected from MC38 cancer cells treated with increasing concentrations of cisplatin (red) or carboplatin (black). Supernatant was collected 3 days after treatment. Data depict one representative experiment of two independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (B) Protein expression of MHC-I, PD-L1, CD40, and CD86 as measured by median fluorescence intensity in monocyte-derived DCs after 24 h of co-culture with MC38 cancer cells that were primed with dose titrations of cisplatin (red) or carboplatin (black) for 24 h. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (C) Flow cytometry histograms depicting OT-I T cell proliferation measured by <t>CellTrace</t> Blue dilution assay. MC38-OVA cells were pretreated with dose titrations of cisplatin or carboplatin for 24 h. OT-I T cells were co-cultured with pretreated MC38-OVA cells for 3 days in the presence or absence of monocyte-derived DCs before the proliferation assay. Data depict one representative experiment of two independent experiments. (D and E) Representative flow cytogram showing OT-I T cell-mediated MC38-OVA cancer cell killing (D) and the summarized percentage of OT-I T cell-mediated tumor cell death (E) as measured by 7-AAD and annexin V staining. MC38-OVA tumor cells were pretreated with increasing concentrations of cisplatin or carboplatin for 24 h, followed by co-culture with OT-I T cells for 5 h before the assay. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. See also <xref ref-type=Figure S9 . " width="250" height="auto" />
    Celltrace Blue Cell Proliferation Kit C34574, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/celltrace+blue+cell+proliferation+kit/celltrace+blue++c34574/pmc08100288-42-7-12
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    Co-culture of cisplatin- versus carboplatin-pretreated MC38 cancer cells with bone marrow-derived DCs and OT-I T cells induces DC activation, OT-I T cell proliferation, and antigen-specific T cell-mediated MC38 killing (A) HMGB1 secretion as measured in the supernatant collected from MC38 cancer cells treated with increasing concentrations of cisplatin (red) or carboplatin (black). Supernatant was collected 3 days after treatment. Data depict one representative experiment of two independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (B) Protein expression of MHC-I, PD-L1, CD40, and CD86 as measured by median fluorescence intensity in monocyte-derived DCs after 24 h of co-culture with MC38 cancer cells that were primed with dose titrations of cisplatin (red) or carboplatin (black) for 24 h. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (C) Flow cytometry histograms depicting OT-I T cell proliferation measured by CellTrace Blue dilution assay. MC38-OVA cells were pretreated with dose titrations of cisplatin or carboplatin for 24 h. OT-I T cells were co-cultured with pretreated MC38-OVA cells for 3 days in the presence or absence of monocyte-derived DCs before the proliferation assay. Data depict one representative experiment of two independent experiments. (D and E) Representative flow cytogram showing OT-I T cell-mediated MC38-OVA cancer cell killing (D) and the summarized percentage of OT-I T cell-mediated tumor cell death (E) as measured by 7-AAD and annexin V staining. MC38-OVA tumor cells were pretreated with increasing concentrations of cisplatin or carboplatin for 24 h, followed by co-culture with OT-I T cells for 5 h before the assay. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. See also <xref ref-type=Figure S9 . " width="100%" height="100%">

    Journal: Cell Reports Medicine

    Article Title: Immunomodulatory effects and improved outcomes with cisplatin- versus carboplatin-based chemotherapy plus atezolizumab in urothelial cancer

    doi: 10.1016/j.xcrm.2024.101393

    Figure Lengend Snippet: Co-culture of cisplatin- versus carboplatin-pretreated MC38 cancer cells with bone marrow-derived DCs and OT-I T cells induces DC activation, OT-I T cell proliferation, and antigen-specific T cell-mediated MC38 killing (A) HMGB1 secretion as measured in the supernatant collected from MC38 cancer cells treated with increasing concentrations of cisplatin (red) or carboplatin (black). Supernatant was collected 3 days after treatment. Data depict one representative experiment of two independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (B) Protein expression of MHC-I, PD-L1, CD40, and CD86 as measured by median fluorescence intensity in monocyte-derived DCs after 24 h of co-culture with MC38 cancer cells that were primed with dose titrations of cisplatin (red) or carboplatin (black) for 24 h. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. (C) Flow cytometry histograms depicting OT-I T cell proliferation measured by CellTrace Blue dilution assay. MC38-OVA cells were pretreated with dose titrations of cisplatin or carboplatin for 24 h. OT-I T cells were co-cultured with pretreated MC38-OVA cells for 3 days in the presence or absence of monocyte-derived DCs before the proliferation assay. Data depict one representative experiment of two independent experiments. (D and E) Representative flow cytogram showing OT-I T cell-mediated MC38-OVA cancer cell killing (D) and the summarized percentage of OT-I T cell-mediated tumor cell death (E) as measured by 7-AAD and annexin V staining. MC38-OVA tumor cells were pretreated with increasing concentrations of cisplatin or carboplatin for 24 h, followed by co-culture with OT-I T cells for 5 h before the assay. Data depict one representative experiment of three independent experiments; duplicate conditions for each experiment. Data are mean ± SEM. See also Figure S9 .

    Article Snippet: The following day, OT-I CD8 + T cells labeled with the CellTrace Blue Cell proliferation kit (Thermo Fisher Scientific, Cat# C34568) were added at a density of 50,000 cells/well in the presence or absence of DCs.

    Techniques: Co-Culture Assay, Derivative Assay, Activation Assay, Expressing, Fluorescence, Flow Cytometry, Dilution Assay, Cell Culture, Proliferation Assay, Staining

    Journal: Cell Reports Medicine

    Article Title: Immunomodulatory effects and improved outcomes with cisplatin- versus carboplatin-based chemotherapy plus atezolizumab in urothelial cancer

    doi: 10.1016/j.xcrm.2024.101393

    Figure Lengend Snippet:

    Article Snippet: The following day, OT-I CD8 + T cells labeled with the CellTrace Blue Cell proliferation kit (Thermo Fisher Scientific, Cat# C34568) were added at a density of 50,000 cells/well in the presence or absence of DCs.

    Techniques: Blocking Assay, Recombinant, Cell Isolation, Activation Assay, Enzyme-linked Immunosorbent Assay, Staining, Software